FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5203894
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG1433450.082.062551
GTGTTGG1472600.079.125132
TGTTGGG1485100.076.966193
GTTGGGT1569800.072.403854
TTGGGTG1769650.064.574135
TGGGTGT1768000.064.28956
GGGTGTG1854150.061.156837
GGTGTGT1957950.057.791798
GTGTGTT2006250.055.9368829
GTTGCGT11350.053.776754
TGTTGCG11450.052.4889953
TTGCGTG12250.049.8930135
TGCGTGT18550.034.4679036
GCGTGTG19600.033.6067667
CGTGTGT20950.031.0228258
TGTGTTT2019700.027.56035610-11
GTGTTTG2233650.026.56941410-11
TGTCGGG4350.025.9051283
TGTTTGG2231800.024.70615212-13
GTTTGGT1378600.024.5714812-13
Produced by FastQC (version 0.11.5)