FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52138762
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG13160850.078.69081
GTGTTGG13358450.075.675952
TGTTGGG13445250.073.559493
GTTGGGT14192850.069.306854
TTGGGTG15892150.062.4081545
GTTGCGT154050.062.335194
TGGGTGT15884550.061.886866
GGGTGTG16756950.058.487427
TGTTGCG170400.056.378243
TTGCGTG175250.055.592395
GGTGTGT18334600.053.3052188
GTGTGTT19391100.050.4904869
TGCGTGT225650.044.1852956
GCGTGTG231950.043.5524027
CGTGTGT244950.040.6581888
TGTGTTT19567900.024.82257810-11
GTTCGGT53450.023.7666554
GTGTTTG22147000.023.58699810-11
GTGTTGC448200.022.4861452
TGTTTGG22096650.021.58327712-13
Produced by FastQC (version 0.11.5)