FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52362239
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG10391950.077.257111
GTGTTGG10782050.073.008062
TGTTGGG10946750.070.593533
GTTGGGT11727300.065.6306844
TGGGTGT13071950.059.044626
TTGGGTG13236350.058.941455
GTTGCGT109700.055.7618374
GGGTGTG13877800.055.4260757
GGTGTGT15234000.050.284668
TTGCGTG130200.047.705745
TGTTGCG130450.047.013473
GTGTGTT16415900.046.8773429
TGCGTGT167200.038.314186
GCGTGTG194100.034.1707657
CGTGTGT200650.032.5867358
TGTGTTT16507750.023.16689310-11
GTGTTTG19254700.021.66555810-11
GTTCGGT43450.021.5177084
TGTTTGG19227400.019.49242812-13
GTTTGGT12807000.019.45743812-13
Produced by FastQC (version 0.11.5)