FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59039687
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG10346500.076.692761
GTGTTGG10927800.072.327082
TGTTGGG11104700.069.9626543
GTTGGGT11937650.064.76814
TTGGGTG13644750.057.397495
TGGGTGT13560200.057.1349336
GGGTGTG14653850.052.7155537
GGTGTGT15930500.048.2884568
GTGTGTT16876800.045.3023879
TGTGTTT16847650.022.61351810-11
GTTGCGT65350.021.9558854
GTGTTTG19572900.021.26510410-11
GTTTGGT12438050.019.24934212-13
ACGACAT251950.019.2451994
TGTTTGG19606450.019.199212-13
CGTAGCC28150.018.21067294
TGTTGCG80700.017.9433023
TTGCGTG82250.017.5580485
AACGACA318500.017.37980794
TTGGTTT7370000.017.21449914-15
Produced by FastQC (version 0.11.5)