FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58876877
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG11014750.054.086321
GTGTTGG11476200.051.7839052
TGTTGGG11796950.049.7512633
GTTGGGT12277550.047.6661644
TGGGTGT13625700.043.69916
TTGGGTG13965500.043.1587525
GGGTGTG14290650.041.4599467
GGTGTGT16501700.035.7436838
GTGTGTT18184950.032.403939
TGGTTTT8715450.023.8202464
TTTGGTT12371000.022.3869442
TTGGTTT11712800.020.970113
GGTTTTT8713050.020.18025
GTTTGGT15731750.019.9341221
GTGTCGG47200.016.7045152
TGTGTTT17796750.016.5301810-11
GTGTTTG20887800.016.2541261
TGTCGGG49750.015.7703353
TGTTTGG21049800.015.7344332
TGGTTTG2461150.015.0216524
Produced by FastQC (version 0.11.5)