FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58776360
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG10373650.061.31291
GTGTTGG10740900.059.133592
TGTTGGG11040450.056.8708233
GTTGGGT11533600.054.227754
TGGGTGT12526150.050.21036
TTGGGTG12864100.049.4508555
GGGTGTG13155850.047.5543947
GGTGTGT14990050.041.5428168
GTGTGTT16317500.037.9927029
TTGGTTT8581000.024.2471563
TGGTTTT7669900.023.4518324
TTTGGTT10369550.022.1969872
GTTTGGT13046500.019.7692341
GGTTTTT7808900.019.6440415
TGTGTTT16068500.019.08690610-11
GTGTTTG18260400.018.11373110-11
TGTTTGG18300950.016.5991912-13
GAACGAC57650.016.1210494
GTTTGGG8742150.014.87138112-13
TTGGGGG3567450.013.39160214-15
Produced by FastQC (version 0.11.5)