FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005752868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5178589
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAGCCAAGCGGTCTTAGGAAGACAACCTTCCTGGTCAACTCCTTGGCT177020.3418305642714647No Hit
GTGAGGCAAGCGGTCTTAGGAAGACAATTGATAGATTCAACTCCTTGGCT118470.2287688789359418No Hit
AGTCGGAGGCCAAGCGGTCTTAGGAAGACAAAATATCTCTCCAACTCCTT109890.21220065929155604No Hit
GTGAGCCAAGCGGTCTTAGGAAGACAATTGATAGATTCAACTCCTTGGCT105880.2044572372899259No Hit
GTGAGGCAAGCGGTCTTAGGAAGACAACCTTCCTGGTCAACTCCTTGGCT104680.20214000377322855No Hit
GTGGGCCAAGCGGTCTTAGGAAGACAACCTTCCTGGTCAACTCCTTGGCT69380.1339747178237161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)