EGAF00005752892 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005752892
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5607274
Sequences flagged as poor quality	0
Sequence length	100
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGTCGGAGGCCAAGCGGTCTTAGGAAGACAAGACTCACTGACAACTCCTT	34523	0.6156824153768837	No Hit
GTGAGCCAAGCGGTCTTAGGAAGACAATGTCATAAATCAACTCCTTGGCT	20510	0.36577488455174473	No Hit
GTGAGCCAAGCGGTCTTAGGAAGACAAATAAGGCAGTCAACTCCTTGGCT	14123	0.2518692683824618	No Hit
GTGAGCCAAGCGGTCTTAGGAAGACAATTAATTAAGGCAACTCCTTGGCT	13575	0.24209624855143513	No Hit
GTGAGGCAAGCGGTCTTAGGAAGACAATGTCATAAATCAACTCCTTGGCT	12489	0.22272854866732034	No Hit
GTGAGGCAAGCGGTCTTAGGAAGACAAATAAGGCAGTCAACTCCTTGGCT	10633	0.18962868588194548	No Hit
GTGGGCCAAGCGGTCTTAGGAAGACAATGTCATAAATCAACTCCTTGGCT	10456	0.18647207181243505	No Hit
GTGAGGCAAGCGGTCTTAGGAAGACAATTAATTAAGGCAACTCCTTGGCT	8120	0.144811899686015	No Hit
GTGGGCCAAGCGGTCTTAGGAAGACAAATAAGGCAGTCAACTCCTTGGCT	5875	0.10477461953883474	No Hit
GTGGGCCAAGCGGTCTTAGGAAGACAATTAATTAAGGCAACTCCTTGGCT	5725	0.10209952286975811	No Hit
GTGAGCAAGCGGTCTTAGGAAGACAATGTCATAAATCAACTCCTTGGCTC	5695	0.10156450353594278	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGTTGCG	33810	90.010544	3
TCGGACG	1485	88.81174	3
CGGACGC	1575	87.613556	4
GTTGCGT	36225	87.223526	4
GTGTTGC	37490	84.487236	2
GCGTGTC	3330	84.11659	7
TTGCGTG	37945	83.23143	5
GGACGCC	1600	82.3678	5
TGCGTGT	39835	81.598305	6
AGTTGCG	1440	81.12	3
GCGTGTG	37630	79.35411	7
ACTCGGA	1775	76.89732	1
GACGCCA	1965	76.88859	6
CGTGTGT	38995	76.45447	8
GTTGCCT	11675	75.474655	4
CGTGTCT	3755	74.32873	8
ACGCCAA	1975	73.89304	7
CGACGCC	275	73.59615	5
CGCCAAG	1950	72.52906	8
CCGACGC	295	71.84139	4