FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005752895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3835086
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAGCCAAGGAGTTGATTTATGACATTGTCTTCCTAAGACCGCTTGGCC129540.337775997722085No Hit
GTGAGCCAAGGAGTTGATTTATGACATTGTCTTCCTAAGACCGCTTGGCT94890.24742600296316694No Hit
GTGAGCCAAGGAGTTGCCTTAATTAATTGTCTTCCTAAGACCGCTTGGCC69200.18043923917221152No Hit
GTGAGCCAAGGAGTTGATTTATGACATTGTCTTCCTAAGACCGCTTGCCT69160.1803349390339617No Hit
GTGAGCCAAGGAGTTGTCAGTGAGTCTTGTCTTCCTAAGACCGCTTGGCC59510.1551725306811894No Hit
GTGAGCCAAGGAGTTGACTGCCTTATTTGTCTTCCTAAGACCGCTTGGCC55790.14547261782395493No Hit
GTGAGCCAAGGAGTTGACTGCCTTATTTGTCTTCCTAAGACCGCTTGGCT53840.14038798608427555No Hit
GTGAGCCAAGGAGTTGCCTTAATTAATTGTCTTCCTAAGACCGCTTGGCT53490.13947535987458953No Hit
GTGAGCCAAGGAGTTGACTGCCTTATTTGTCTTCCTAAGACCGCTTGCCT44510.11605997883750195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)