FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7786295
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTGG114250.074.2893751
TATTGGG139100.067.996032
CTTGCGT48100.066.378951
TCTTGGG389400.066.0818562
ATTGGGT170350.065.0460743
GATGCGT18950.064.268221
GTCTTGG289950.063.361581
CTCTTGG219400.063.182471
TGTTGCG49300.061.707853
ATGCGTG25700.059.7491152
TGTGTTG1672600.058.262251
TGAGTGT242450.058.074713
GTTGAGT152150.056.6804241
TTGAGTG180550.056.194682
GATGGGT205650.055.8828051
ATGGGTG225450.055.449512
GAGTGTG237000.055.3848084
TTGCGTG148800.054.6684072
CTTGGGT500400.054.4226653
GTTGCGT112350.054.158541
Produced by FastQC (version 0.11.5)