EGAF00005753262 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753262
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52478789
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5140	0.0	13.706374	145
AGCGTCG	63965	0.0	5.6091685	145
TCGTGTA	57025	0.0	5.4512043	145
GTCGCCG	15645	0.0	5.3851323	145
CGTGTAG	57455	0.0	5.3219185	145
CGCCGTA	12355	0.0	5.2907076	145
GAGCGTC	70405	0.0	5.271466	145
CGTCGTG	58080	0.0	5.2146297	145
GTGGTCG	20410	0.0	5.195458	145
GTCGTGG	9395	0.0	5.1795497	145
TGGTCGC	18615	0.0	5.150209	145
AGAGCGG	15515	0.0	5.1493793	145
GCGTCGT	59415	0.0	5.1292863	140-144
GTCGTGT	58445	0.0	5.119928	145
AAGAGCG	85780	0.0	5.097115	145
TCGGTGG	27365	0.0	5.095887	145
TCGGAAG	92960	0.0	5.008133	145