EGAF00005753282 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753282
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63047788
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6610	0.0	12.297997	145
AGCGTCG	69455	0.0	6.3222213	145
CGTCGTG	62205	0.0	6.277328	145
TCGTGTA	60350	0.0	6.061374	145
GAGCGTC	77770	0.0	6.0195694	145
GCGTCGT	63685	0.0	5.8876534	140-144
GTCGTGT	62570	0.0	5.8579144	145
CGTGTAG	60100	0.0	5.808827	145
CGCCGTA	12320	0.0	5.773421	145
GATCGGA	105460	0.0	5.629676	145
ATCGGAA	104355	0.0	5.494544	145
TCGGAAG	103290	0.0	5.4106607	145
AAGAGCG	95745	0.0	5.3594613	145
AGATCGG	109695	0.0	5.253534	145
AGAGCGT	84105	0.0	5.1891418	140-144
CGGAAGA	103405	0.0	5.1379204	145
GGTCGCC	20025	0.0	5.110512	145
TAGATCG	39350	0.0	5.090755	145
AGAGCGG	19415	0.0	5.0841618	145