EGAF00005753318 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753318
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63959045
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6230	0.0	11.175763	145
GAGCGTC	67575	0.0	6.7186537	145
AGCGTCG	59650	0.0	6.638595	145
CGTCGTG	53375	0.0	6.6173644	145
TCGTGTA	51740	0.0	6.2797966	145
GCGTCGT	54540	0.0	5.909537	140-144
CGTGTAG	51805	0.0	5.8799224	145
ATCGGAA	92785	0.0	5.846794	145
TCGGAAG	91910	0.0	5.799874	145
AGATCGG	97860	0.0	5.78074	145
GTCGTGT	54080	0.0	5.659392	145
TAGATCG	36220	0.0	5.546581	145
AAGAGCG	85800	0.0	5.469039	145
CGGAAGA	92385	0.0	5.4560375	145
GATCGGA	93760	0.0	5.453377	145
CGCCGTA	11420	0.0	5.3322587	45-49
AGAGCGT	74565	0.0	5.283038	140-144
AGAGCGG	18855	0.0	5.231261	145