EGAF00005753320 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753320
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63386838
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6040	0.0	13.566871	145
CGTCGTG	51700	0.0	7.0693293	145
AGCGTCG	57345	0.0	6.3228464	145
GCGTCGT	52855	0.0	6.0371647	140-144
GATCGGA	89870	0.0	5.9872494	145
CGTGTAG	50455	0.0	5.978983	145
TCGGAAG	88010	0.0	5.940752	145
GTCGTGT	52295	0.0	5.8656807	145
TCGTGTA	50005	0.0	5.800758	145
GAGCGTC	64905	0.0	5.798657	145
ATCGGAA	89005	0.0	5.7847176	145
TAGATCG	35125	0.0	5.7806935	145
AGATCGG	94180	0.0	5.597756	145
CGGAAGA	88400	0.0	5.5289903	145
CGCCGTA	10795	0.0	5.493297	45-49
AAGAGCG	82490	0.0	5.3537016	145
AGAGCGT	71555	0.0	5.2941775	140-144