EGAF00005753324 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753324
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62896399
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6200	0.0	13.235167	145
CGTCGTG	53390	0.0	6.732679	145
AGCGTCG	59695	0.0	6.313527	145
CGTGTAG	52520	0.0	6.24966	145
GCGTCGT	54830	0.0	6.1539	140-144
TCGTGTA	51875	0.0	6.1033883	145
GTCGTGT	54290	0.0	6.0726557	145
AGATCGG	96845	0.0	5.871205	145
AAGAGCG	85355	0.0	5.7257023	145
CGCCGTA	10960	0.0	5.6750627	45-49
GAGCGTC	67455	0.0	5.6625786	145
ATCGGAA	92190	0.0	5.6083984	145
GATCGGA	92940	0.0	5.547513	145
TCGGAAG	91875	0.0	5.509067	145
CGGAAGA	92060	0.0	5.48222	145
AGAGCGT	75115	0.0	5.25839	140-144
TAGATCG	35895	0.0	5.1385713	145
TCGCCGT	12715	0.0	5.0171866	45-49