EGAF00005753350 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753350
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	46619609
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	4585	0.0	13.123687	145
CGTCGTG	44815	0.0	6.778096	145
CGTGTAG	43385	0.0	6.3331056	145
ATCGGAA	76295	0.0	6.0338535	145
AGCGTCG	49525	0.0	6.00173	145
GATCGGA	77750	0.0	5.9675584	145
GCGTCGT	45660	0.0	5.94421	140-144
TCGGAAG	75205	0.0	5.928509	145
GTCGTGT	45655	0.0	5.9070644	145
AGATCGG	81585	0.0	5.8203363	145
AAGAGCG	68710	0.0	5.7186885	145
TCGTGTA	43220	0.0	5.618938	140-144
GAGCGTC	55250	0.0	5.5635333	145
TAGATCG	30490	0.0	5.4209027	140-144
AGAGCGG	12700	0.0	5.3658834	145
AGAGCGT	60265	0.0	5.2689743	145
CGGAAGA	75175	0.0	5.1208043	145