EGAF00005753361 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753361
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	72536683
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	110795	0.0	6.203339	145
TATGCCG	21885	0.0	6.161745	145
CTCGTAT	26480	0.0	5.913888	145
ACGTCTG	120365	0.0	5.8366127	145
TCTCGTA	27550	0.0	5.710517	145
CGTATGC	26025	0.0	5.627273	145
ACACGTC	124270	0.0	5.6182017	145
CACGTCT	127440	0.0	5.5979195	145
TCGCGTA	1825	0.0012360762	5.561635	145
GCACACG	146990	0.0	5.553771	145
ATCTCGT	32630	0.0	5.488039	145
ATGCCGT	25900	0.0	5.4304934	145
TGCCGTC	25100	0.0	5.372501	145
AGATCGG	196640	0.0	5.2760034	145
TCGGAAG	183855	0.0	5.2406707	145
CACACGT	144035	0.0	5.194563	145
TCGTATG	27590	0.0	5.0715756	145
ATCGGAA	187090	0.0	5.0686755	145
GATCGGA	190700	0.0	5.0563636	145