EGAF00005753367 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753367
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	73032803
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCGTA	1960	3.4197E-9	7.778558	145
CTCGTAT	25900	0.0	6.363001	145
TCGTATG	27355	0.0	6.3164945	145
TCTCGTA	27940	0.0	6.23621	145
ACGTCTG	119685	0.0	5.835408	145
TATGCCG	22555	0.0	5.761639	145
ACACGTC	124265	0.0	5.719654	145
CGTCTGA	110335	0.0	5.5995374	145
CACGTCT	127195	0.0	5.530821	145
GCACACG	147215	0.0	5.4740257	145
ATCTCGT	33030	0.0	5.4070754	145
CGTATGC	26125	0.0	5.33557	145
CACACGT	144420	0.0	5.223049	145
AGATCGG	195190	0.0	5.2183833	145
TCGGAAG	182890	0.0	5.1604705	145
AATCGCG	2975	8.799836E-6	5.124697	145
GATCGGA	189800	0.0	5.068221	145
GCCGTCT	25435	0.0	5.050853	50-54