EGAF00005753371 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753371
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	72874594
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGTAT	2130	1.7003913E-8	7.1590424	145
CTCGTAT	26975	0.0	6.4604836	145
CGTATGC	26785	0.0	6.2081056	145
CGTCTGA	111890	0.0	5.9770045	145
ACACGTC	125315	0.0	5.869777	145
ACGTCTG	120620	0.0	5.8273525	145
TCGTATG	28320	0.0	5.7946925	145
TATGCCG	22605	0.0	5.7178235	145
TCTCGTA	28460	0.0	5.613103	145
CACGTCT	128115	0.0	5.509111	145
ACGTCGG	2420	4.937162E-5	5.4009776	145
AGATCGG	196910	0.0	5.3470654	145
GCACACG	148395	0.0	5.3434114	145
ATCTCGT	33350	0.0	5.2473063	145
ATCGGAA	188445	0.0	5.151836	145
TAGATCG	74320	0.0	5.0708046	145
TCGGAAG	184170	0.0	5.0703425	145
ATGCCGT	26260	0.0	5.032594	145
CGGAAGA	181190	0.0	5.029499	145