EGAF00005753373 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753373
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	72257431
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGTAT	2095	9.4811185E-8	6.932343	145
TATGCCG	21155	0.0	6.4189305	145
TCTCGTA	27715	0.0	6.340661	145
CGTATGC	25725	0.0	6.2383676	145
CTCGTAT	25815	0.0	6.2166185	145
ACGTCTG	117455	0.0	6.1577477	145
CGTCTGA	108460	0.0	6.08595	145
CACGTCT	125325	0.0	6.0433908	145
ACACGTC	122900	0.0	5.949927	145
ATCGCGT	3235	4.1836756E-8	5.611769	145
CACACGT	142570	0.0	5.4397283	145
ATGCCGT	24925	0.0	5.331507	145
ATCTCGT	32140	0.0	5.2417483	145
ATCGGAA	184355	0.0	5.234849	145
GCACACG	144865	0.0	5.2282324	145
TCGGAAG	179965	0.0	5.1769347	145
AGATCGG	193000	0.0	5.147103	145
TCGTATG	27260	0.0	5.087935	145
CGGAAGA	177735	0.0	5.06212	145