EGAF00005753433 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753433
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59015760
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	57425	0.0	6.968225	145
TATGCCG	12505	0.0	6.318933	45-49
ACACGTC	65530	0.0	6.2612405	145
ACGTCTG	64270	0.0	6.180966	145
ATCGGAA	101405	0.0	5.933389	145
CACGTCT	69470	0.0	5.885264	145
AGATCGG	105950	0.0	5.760966	145
GCACACG	81495	0.0	5.71958	145
TAGATCG	40415	0.0	5.6679845	145
TCGGAAG	99650	0.0	5.5795884	145
CGGAAGA	98915	0.0	5.5770764	145
GATCGGA	102640	0.0	5.530052	145
CGTATGC	14815	0.0	5.4217443	45-49
CACACGT	80565	0.0	5.2997212	145
GCCGTCT	15930	0.0	5.178808	50-54
CTCGTAT	14875	0.0	5.15622	40-44
ATCTCGT	19645	0.0	5.0922675	145
TGCCGTC	15580	0.0	5.053191	50-54