EGAF00005753446 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753446
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63591706
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	4950	0.0	11.715289	145
AGCGTCG	57860	0.0	7.2287903	145
CGTCGTG	52160	0.0	6.6985025	145
GAGCGTC	65615	0.0	6.4628043	145
GTCGTGT	53230	0.0	6.386819	145
TCGTGTA	51125	0.0	6.281142	145
CGTGTAG	51415	0.0	6.1611223	145
GCGTCGT	53555	0.0	5.9611473	140-144
AGATCGG	94245	0.0	5.9455137	145
ACCGCGC	17585	0.0	5.580901	1
ATCGGAA	89025	0.0	5.5124536	145
TAGATCG	35495	0.0	5.493553	145
AGAGCGT	72415	0.0	5.4196634	140-144
CGCCGTA	9640	0.0	5.4140677	145
GATCGGA	89185	0.0	5.2262163	145
AAGAGCG	82050	0.0	5.194778	145
TCGGAAG	88505	0.0	5.176277	145
CGGAAGA	88770	0.0	5.0873322	145
GTCGCCG	13605	0.0	5.061664	145