EGAF00005753456 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753456
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63771059
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	4940	0.0	12.9133835	145
CGTCGTG	51185	0.0	6.967977	145
AGCGTCG	56715	0.0	6.6336684	145
GCGTCGT	52505	0.0	6.1991196	145
TCGTGTA	50375	0.0	6.14465	145
GAGCGTC	64495	0.0	6.125687	145
GTCGTGT	51785	0.0	5.991342	145
CGTGTAG	50100	0.0	5.9324	145
AGATCGG	93985	0.0	5.8542004	145
ACCGCGC	17445	0.0	5.7334046	1
GATCGGA	88460	0.0	5.711763	145
CGCCGTA	9100	0.0	5.6558943	145
ATCGGAA	87365	0.0	5.642295	145
TCGGAAG	87170	0.0	5.613336	145
AGAGCGT	71200	0.0	5.548823	145
TAGATCG	35105	0.0	5.492841	145
CGGAAGA	87930	0.0	5.4906216	145
AAGAGCG	80770	0.0	5.4747477	145
TGGTCGC	15355	0.0	5.4291563	145