FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005753457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005753457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53732779
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGC139150.010.5954091
CGCGATC91400.09.366873
GCGCGAT92400.08.9514372
ACCGCAC141750.08.9375991
GCTCACG461350.08.7910592
CTCACGC450300.08.7489613
ACGCGAG29500.08.1161822
AACGCGA26200.07.9178011
GGCGCGA109450.07.8521771
ACCGTGC169900.07.5003741
CCGCGCC207800.07.33218862
GCGATCT190750.07.22024444
CACGCCT610600.06.88547665
ACTGCGC153250.06.81657841
TCACGCC595550.06.74301864
ACGCCTG588350.06.7392886
CGCGCCC168700.06.53713043
CGCCTGT633100.06.5148197
CCGTGCC201850.06.1824352
CGTCTGA378000.06.1557093145
Produced by FastQC (version 0.11.5)