EGAF00005753506 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753506
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61418534
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5145	0.0	8.46761	145
AGCGTCG	47645	0.0	6.629289	145
ATCGGAA	74410	0.0	6.352501	145
CGTCGTG	43180	0.0	6.289035	145
GAGCGTC	55150	0.0	6.1616263	145
GATCGGA	74630	0.0	5.9348726	145
AGATCGG	78905	0.0	5.8985944	145
TCGTGTA	42845	0.0	5.8806367	145
CGTGTAG	43600	0.0	5.8787265	145
GCGTCGT	43975	0.0	5.7628	140-144
AGAGCGT	60530	0.0	5.733928	145
TCGGAAG	74220	0.0	5.7230816	145
TAGATCG	29710	0.0	5.4988885	145
GTCGTGT	44490	0.0	5.4836774	145
AAGAGCG	69625	0.0	5.2664895	145
CGGAAGA	74125	0.0	5.2014546	145