EGAF00005753508 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753508
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62037452
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5345	0.0	7.8829923	145
AGCGTCG	48505	0.0	6.7396417	145
GAGCGTC	56725	0.0	6.3008833	145
GATCGGA	75875	0.0	6.2520914	145
CGTCGTG	43950	0.0	6.2480392	145
CGTGTAG	44470	0.0	6.044292	145
AGATCGG	79890	0.0	5.883323	145
TCGGAAG	75015	0.0	5.839559	145
GTCGTGT	45645	0.0	5.825037	145
GCGTCGT	45090	0.0	5.8000684	145
ATCGGAA	75165	0.0	5.779581	145
AAGAGCG	70320	0.0	5.754229	145
TAGATCG	29385	0.0	5.7108026	145
TCGTGTA	43670	0.0	5.350313	140-144
CGCGATC	11815	0.0	5.215122	3
AGAGCGT	61255	0.0	5.183729	140-144
CGGAAGA	75130	0.0	5.066741	145