EGAF00005753512 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753512
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62141115
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5025	0.0	7.504651	145
AGCGTCG	50510	0.0	6.46098	145
GATCGGA	78295	0.0	6.455977	145
CGTGTAG	45835	0.0	6.3605113	145
CGTCGTG	45810	0.0	6.3164907	145
ATCGGAA	77545	0.0	6.078869	145
GTCGTGT	47030	0.0	6.0138535	145
TCGTGTA	44870	0.0	5.9316187	145
GCGTCGT	46745	0.0	5.921412	140-144
GAGCGTC	58230	0.0	5.8908443	145
AAGAGCG	72100	0.0	5.572342	145
TCGGAAG	77840	0.0	5.5340986	145
AGATCGG	82200	0.0	5.4523015	145
TAGATCG	30075	0.0	5.401391	145
AGAGCGT	62945	0.0	5.207634	145
CGGAAGA	77570	0.0	5.1139536	145