EGAF00005753516 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753516
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62358949
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5050	0.0	9.201784	145
CGTCGTG	45095	0.0	6.875162	145
AGATCGG	82420	0.0	6.483786	145
AGCGTCG	49775	0.0	6.3016744	145
GAGCGTC	58030	0.0	6.243548	145
GATCGGA	77955	0.0	6.100716	145
CGTGTAG	45170	0.0	6.0439553	145
GCGTCGT	46115	0.0	6.032036	140-144
GTCGTGT	46315	0.0	5.988598	145
ATCGGAA	77500	0.0	5.921052	145
TCGTGTA	44225	0.0	5.8611636	145
TAGATCG	30100	0.0	5.596351	145
TCGGAAG	77870	0.0	5.529272	145
CGGAAGA	77990	0.0	5.4649053	145
AGAGCGT	62790	0.0	5.365509	145
AAGAGCG	71530	0.0	5.227601	145
GCGCGAT	12015	0.0	5.082274	2