EGAF00005753518 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753518
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61522946
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	4725	0.0	7.983783	145
AGCGTCG	46045	0.0	6.86928	145
CGTCGTG	41530	0.0	6.7601485	145
GTCGTGT	43000	0.0	6.410949	145
GAGCGTC	53590	0.0	6.213497	145
GCGTCGT	42710	0.0	6.030666	140-144
TCGTGTA	41095	0.0	6.0196686	145
AGATCGG	75850	0.0	5.8628945	145
ATCGGAA	71465	0.0	5.8267407	145
TCGGAAG	71700	0.0	5.7368183	145
CGTGTAG	41980	0.0	5.5989904	145
GATCGGA	71890	0.0	5.5501075	145
TAGATCG	27870	0.0	5.5443397	145
AGAGCGT	58195	0.0	5.3729773	140-144
AAGAGCG	67120	0.0	5.2528076	145
CGGAAGA	72170	0.0	5.2069116	145