EGAF00005753522 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753522
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59367366
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6510	0.0	14.477265	145
AGAGCGG	17900	0.0	5.953721	145
GTCGTGT	99065	0.0	5.832601	145
CGTGTAG	94145	0.0	5.8216853	145
AGCGTCG	109940	0.0	5.8161697	145
TCGTGTA	94495	0.0	5.746417	145
CGTCGTG	100065	0.0	5.6149216	145
GTGGTCG	34550	0.0	5.5815873	145
GCGTCGT	102845	0.0	5.319242	140-144
GAGCGTC	119110	0.0	5.2953568	145
AGATCGG	166180	0.0	5.2438455	145
ATCGGAA	158905	0.0	5.2056174	145
TGGTCGC	31700	0.0	5.1914754	145
CGCCGTA	22370	0.0	5.1205344	145
TCGGTGG	43670	0.0	5.0467825	145
AGAGCGT	127880	0.0	5.005901	145