EGAF00005753526 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753526
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60580055
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6780	0.0	15.610593	145
CGTGTAG	99440	0.0	5.883132	145
AGAGCGG	18070	0.0	5.69674	145
GTCGCCG	30045	0.0	5.670115	145
CGCCGTA	24240	0.0	5.6523023	145
CGTCGTG	105135	0.0	5.619614	145
AGCGTCG	115375	0.0	5.5166955	145
TCGTGTA	99715	0.0	5.3580065	145
GCGTCGT	108205	0.0	5.312716	140-144
GTCGTGT	103815	0.0	5.306941	140-144
GATCGGA	168125	0.0	5.234589	145
GAGCGTC	125140	0.0	5.184694	145
AAGAGCG	146820	0.0	5.174546	145
GTGTAGG	117390	0.0	5.1564593	145
AGATCGG	172795	0.0	5.067946	145
GTGGTCG	36770	0.0	5.066823	145
ATCGGAA	164310	0.0	5.042878	145
GGTCGCC	33355	0.0	5.0422373	145
CGGAAGA	159975	0.0	5.016395	145