EGAF00005753532 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753532
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60414813
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6770	0.0	14.244217	145
TCGCCGG	5120	0.0	5.8061666	145
AGCGTCG	115375	0.0	5.706236	145
CGTGTAG	99280	0.0	5.652685	145
CGCCGTA	24130	0.0	5.588963	145
CGTCGTG	104585	0.0	5.5392756	145
GTCGTGT	103635	0.0	5.345182	145
GAGCGTC	124860	0.0	5.2959895	145
TCGTGTA	99245	0.0	5.2929726	140-144
GCGTCGT	107925	0.0	5.2367244	140-144
GTGTAGG	117690	0.0	5.144255	145
ATCGGAA	165115	0.0	5.1421647	145
GATCGGA	168515	0.0	5.141679	145
AGATCGG	173255	0.0	5.1140037	145
TAGATCG	61095	0.0	5.1031504	145
TGGTCGC	33430	0.0	5.075222	145