EGAF00005753534 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753534
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60168392
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	7290	0.0	13.523952	145
CGTCGTG	103870	0.0	6.0020633	145
AGCGTCG	114480	0.0	5.876389	145
AGAGCGG	19460	0.0	5.6250496	145
ATCGGAA	163460	0.0	5.4770627	145
CGTGTAG	97790	0.0	5.4337764	145
TCGTGTA	97765	0.0	5.412921	145
GGTCGCC	33035	0.0	5.3982506	145
GTGGTCG	36395	0.0	5.397837	145
GTCGCCG	29345	0.0	5.385359	145
AGATCGG	172220	0.0	5.375261	145
GCGTCGT	106775	0.0	5.2264333	140-144
GTCGTGT	102130	0.0	5.209967	145
GAGCGTC	123755	0.0	5.1196575	145
TCTCGGT	47570	0.0	5.089857	145
GATCGGA	166745	0.0	5.047446	145
AAGAGCG	146295	0.0	5.039457	145