EGAF00005753536 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753536
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57659602
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	6425	0.0	13.427265	145
TCGTGTA	91870	0.0	6.0051613	145
GTCGCCG	26100	0.0	5.944112	145
AGAGCGG	17840	0.0	5.9329643	145
CGTCGTG	97085	0.0	5.89914	145
CGTGTAG	91940	0.0	5.819231	145
GGTCGCC	29610	0.0	5.6801963	145
AGCGTCG	106805	0.0	5.586271	145
TGGTCGC	30090	0.0	5.5413985	145
ATCGGAA	154610	0.0	5.504834	145
GTGGTCG	33270	0.0	5.491127	145
TCTCGGT	44295	0.0	5.450085	145
GCGTCGT	100125	0.0	5.36946	140-144
GTCGTGT	96390	0.0	5.347507	145
TCGGAAG	151535	0.0	5.3103576	145
AGATCGG	162940	0.0	5.2812505	145
GAGCGTC	115815	0.0	5.245573	145
AAGAGCG	137150	0.0	5.1907415	145
CGGAAGA	149655	0.0	5.1493897	145