FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005753609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005753609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53903911
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG96450.08.62824645-49
ATCGGAA525050.07.5804022
TCGGAAG526100.07.55149273
GATCGGA523400.07.5027781
CGGAAGA535300.07.40788274
CGTATGC116200.07.323940845-49
CTCGTAT108250.07.218973640-44
TCTCGTA114550.06.897886340-44
TGCCGTC129350.06.53478650-54
ATGCCGT133900.06.4099445-49
GCCGTCT134050.06.284034750-54
TCGTATG130600.06.07235345-49
TAGATCG232800.06.041519145
ATCTCGT142100.05.68297540-44
CGTCTTC160800.05.59029750-54
AGATCGG530450.05.5599656140-144
CGTCTGA328200.05.5224123145
AGAGCAC793350.05.427458
GAGCACA826250.05.33416379
CCGTCTT168300.05.31533150-54
Produced by FastQC (version 0.11.5)