EGAF00005753612 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753612
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	53799304
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGTC	45660	0.0	9.160557	9
AGAGCGT	51490	0.0	8.109288	8
GCGTCGG	5135	0.0	7.624553	145
AAGAGCG	59395	0.0	7.1642613	7
ATCGGAA	60830	0.0	7.0202885	2
TCGGAAG	60720	0.0	6.9845743	3
CGCCGTA	12395	0.0	6.971723	45-49
GATCGGA	60760	0.0	6.96991	1
CGGAAGA	62445	0.0	6.791347	4
TCGCCGT	13920	0.0	6.0621147	45-49
GCCGTAT	14955	0.0	6.00129	45-49
CCGTATC	16085	0.0	5.741941	45-49
GTCGCCG	15875	0.0	5.5346894	40-44
TCGTGTA	36815	0.0	5.4749618	145
CGTATCA	16735	0.0	5.4669366	45-49
AGATCGG	61840	0.0	5.451858	145
CGTCGTG	36510	0.0	5.2228193	145
AGCGTCG	39765	0.0	5.141729	145
CGTGTAG	38770	0.0	5.0492754	145