EGAF00005753614 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753614
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	53757377
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGTC	45580	0.0	9.017923	9
AGAGCGT	51765	0.0	7.884586	8
GCGTCGG	5665	0.0	7.6779327	145
AAGAGCG	59905	0.0	7.006847	7
ATCGGAA	60335	0.0	6.921263	2
TCGGAAG	60585	0.0	6.8206053	3
GATCGGA	60205	0.0	6.813059	1
CGCCGTA	12455	0.0	6.716874	45-49
CGGAAGA	62140	0.0	6.7082586	4
CGTCGTG	36375	0.0	6.0385494	145
GCCGTAT	14790	0.0	5.979939	45-49
TCGCCGT	13955	0.0	5.9741087	45-49
AGCGTCG	40135	0.0	5.545084	145
CCGTATC	16375	0.0	5.4896603	45-49
CGTATCA	16520	0.0	5.4326997	45-49
GTCGCCG	16485	0.0	5.312238	40-44
AGATCGG	61185	0.0	5.165764	145
GCGTCGT	37035	0.0	5.069724	140-144