EGAF00005753629 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753629
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54820932
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGTCT	79060	0.0	6.491367	145
ACGTCTG	73310	0.0	6.376703	145
CGTCTGA	50835	0.0	5.983079	145
ACACGTC	57090	0.0	5.9760103	145
ATCGGAA	86820	0.0	5.961332	145
CGTATGC	12770	0.0	5.854905	145
GTCACGT	29200	0.0	5.6928034	145
AGATCGG	91340	0.0	5.6186495	145
AGTCACG	31115	0.0	5.5990586	145
GATCGGA	87805	0.0	5.5720396	145
TCGGAAG	84980	0.0	5.5608068	145
TCACGTC	29900	0.0	5.510972	145
CGGAAGA	84540	0.0	5.5038853	145
CACACGT	70190	0.0	5.4501557	145
CTCGTAT	12490	0.0	5.404979	145
TCTCGTA	13800	0.0	5.2075043	145
GCACACG	71305	0.0	5.2020497	145
TAGATCG	35020	0.0	5.138062	140-144