EGAF00005753633 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753633
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61211782
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCACGA	25835	0.0	6.9304442	145
CGATAGA	20690	0.0	6.8319817	145
ACGATAG	21600	0.0	6.678392	145
CGTCTGA	47795	0.0	6.461	145
ACACGTC	53570	0.0	5.980992	145
CACGATA	24655	0.0	5.939077	145
ATCGGAA	80675	0.0	5.903356	145
AGATCGG	84885	0.0	5.8496814	145
ACGTCTG	53550	0.0	5.8072486	145
CACGTCT	58425	0.0	5.744535	145
TCTCGTA	13570	0.0	5.5555377	145
CGGAAGA	79765	0.0	5.470874	145
TCGGAAG	79655	0.0	5.469329	145
AGTCACG	30265	0.0	5.4130287	145
TCACGAT	27960	0.0	5.3926067	145
GATCGGA	80650	0.0	5.3299475	145
CACACGT	68500	0.0	5.18535	145
GCACACG	68245	0.0	5.0878844	145