EGAF00005753639 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753639
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	64078261
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAG	24410	0.0	6.751173	145
GTCACGA	29325	0.0	6.659405	145
CACGATA	27870	0.0	6.5642447	145
CGATAGA	23340	0.0	6.345276	145
ACACGTC	64065	0.0	6.28917	145
CGTCTGA	56535	0.0	6.227956	145
ACGTCTG	63420	0.0	5.986826	145
CACGTCT	68435	0.0	5.8981757	145
AGTCACG	34605	0.0	5.8111506	145
AGATCGG	101110	0.0	5.765575	145
GATCGGA	96390	0.0	5.724042	145
CTCGTAT	14540	0.0	5.6919575	145
ATCGGAA	95745	0.0	5.519967	145
CGGAAGA	94035	0.0	5.4427805	145
GCACACG	80560	0.0	5.4339924	145
TCGGAAG	94245	0.0	5.3459187	145
TCGTATG	15750	0.0	5.2546706	145
TAGATCG	39240	0.0	5.198745	145
TCACGAT	31675	0.0	5.0494804	140-144