EGAF00005753640 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753640
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	64078261
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5945	0.0	12.936868	145
AGCGTCG	68790	0.0	6.1702914	145
CGTGTAG	61185	0.0	6.0359826	145
CGTCGTG	62470	0.0	5.9698954	145
TCGTGTA	60590	0.0	5.831807	145
GCGTCGT	63830	0.0	5.646948	140-144
GTCGTGT	62955	0.0	5.5435753	145
GAGCGTC	76775	0.0	5.5379996	145
AGATCGG	107205	0.0	5.4482365	145
CGCCGTA	13455	0.0	5.3925157	145
GATCGGA	102110	0.0	5.300852	145
ATCGGAA	101180	0.0	5.270694	145
AAGAGCG	93305	0.0	5.0390096	145
CGGAAGA	100010	0.0	5.034904	145
TCGCCGT	15585	0.0	5.0279636	145
GTCGCCG	17785	0.0	5.01795	145