EGAF00005753642 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753642
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	64765187
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5400	0.0	12.087441	145
CGTCGTG	64100	0.0	6.290749	145
GAGCGTC	78590	0.0	6.0906305	145
CGTGTAG	63215	0.0	6.0805287	145
AGCGTCG	70345	0.0	5.721967	145
ATCGGAA	104865	0.0	5.60196	145
GCGTCGT	65780	0.0	5.536769	140-144
GTCGTGT	64650	0.0	5.4070964	145
TCGTGTA	62450	0.0	5.402498	140-144
AGATCGG	111835	0.0	5.3630686	145
GATCGGA	106570	0.0	5.328591	145
TGGTCGC	21125	0.0	5.321335	145
CGGAAGA	104065	0.0	5.2268753	145
TCGGAAG	103910	0.0	5.143938	145
AAGAGCG	96030	0.0	5.1129003	145
GTCGCCG	18015	0.0	5.072498	145
AGAGCGT	85690	0.0	5.0443096	145