EGAF00005753648 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753648
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	64259762
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5215	0.0	11.540732	145
AGCGTCG	70600	0.0	6.070051	145
CGTCGTG	64170	0.0	6.068088	145
GTCGTGT	64855	0.0	6.0039964	145
CGTGTAG	62430	0.0	5.830691	145
TCGTGTA	61955	0.0	5.7934656	145
GCGTCGT	65710	0.0	5.77481	140-144
GATCGGA	106215	0.0	5.6253686	145
CGCCGTA	13070	0.0	5.6034484	145
GAGCGTC	79180	0.0	5.5954537	145
TCGCCGT	14930	0.0	5.2939067	145
GGTCGCC	20875	0.0	5.2799125	145
TCGGAAG	103810	0.0	5.2597537	145
AGATCGG	110790	0.0	5.2425375	145
AGAGCGT	85765	0.0	5.2250204	145
ATCGGAA	104640	0.0	5.155666	145
AAGAGCG	95310	0.0	5.1506233	145
GTCGCCG	17345	0.0	5.100293	145