EGAF00005753649 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753649
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57783979
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCTCG	12960	0.0	7.998533	145
CGCTCGG	14520	0.0	7.0393367	145
ACCGCGC	15055	0.0	6.623435	1
GATCGGA	62180	0.0	6.6218123	145
TAGATCG	25690	0.0	6.574626	145
GTCACGC	19295	0.0	6.2365236	145
ATCGGAA	62065	0.0	6.213612	145
ACACGTC	40345	0.0	6.1089764	145
TCGGAAG	61430	0.0	5.95923	145
AGATCGG	65520	0.0	5.9412746	145
CGGAAGA	61405	0.0	5.879019	145
ACGTCTG	41650	0.0	5.6564975	145
CGTCTGA	36200	0.0	5.5869513	145
CACGTCT	45380	0.0	5.3992257	145
GCTCACG	47840	0.0	5.2621617	2
CGGTAAT	13495	0.0	5.210485	145
CTCACGC	47075	0.0	5.1919403	3
GCACACG	53655	0.0	5.1204515	145
AGTCACG	22770	0.0	5.0618973	145