EGAF00005753656 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753656
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60848664
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5080	0.0	14.854056	145
AGCGTCG	49240	0.0	6.439303	145
CGTGTAG	44630	0.0	6.4378934	145
CGTCGTG	44415	0.0	6.011649	145
GTCGTGT	45585	0.0	5.968769	145
CGGAAGA	77445	0.0	5.9023185	145
GCGTCGT	45510	0.0	5.900293	140-144
TCGTGTA	43745	0.0	5.8715167	145
AAGAGCG	71380	0.0	5.834596	145
GAGCGTC	56445	0.0	5.668767	145
TCGGAAG	76930	0.0	5.668318	145
AGATCGG	81215	0.0	5.5747294	145
ACCGCGC	16485	0.0	5.4510922	1
GATCGGA	77205	0.0	5.3661914	145
ATCGGAA	77200	0.0	5.363896	140-144
AGAGCGT	61855	0.0	5.255072	145
TAGATCG	31270	0.0	5.104701	145
CGCGATC	9820	0.0	5.094364	3
GCGCGAT	9705	0.0	5.083123	2