EGAF00005753658 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753658
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61278923
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGG	5190	0.0	10.340609	145
CGTCGTG	46025	0.0	6.759977	145
AGCGTCG	51435	0.0	6.316856	145
GTCGTGT	47205	0.0	6.2069054	145
CGTGTAG	46315	0.0	6.0599775	145
TCGTGTA	45540	0.0	6.0197783	145
GCGTCGT	47230	0.0	5.992276	140-144
GAGCGTC	58500	0.0	5.7895226	145
CGGAAGA	78965	0.0	5.767754	145
CGCCGTA	9725	0.0	5.667685	145
AGATCGG	83360	0.0	5.585461	145
GATCGGA	79030	0.0	5.5702977	145
ATCGGAA	78470	0.0	5.4344473	145
TCGGAAG	78870	0.0	5.3241277	145
ACCGCGC	17035	0.0	5.224301	1
GTCGCCG	13720	0.0	5.1802855	145
AGAGCGT	64920	0.0	5.1589746	140-144
AAGAGCG	73505	0.0	5.1503334	145