EGAF00005753665 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753665
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63761851
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTCTG	69250	0.0	6.531927	145
CGCTTAA	22810	0.0	6.2924013	145
CAACGCT	28105	0.0	6.112815	145
ACACGTC	70115	0.0	6.110167	145
CACGTCT	74360	0.0	5.966073	145
TCGTATG	17745	0.0	5.964216	145
GATCGGA	109405	0.0	5.949982	145
AGATCGG	114330	0.0	5.9409504	145
ACGCTTA	24240	0.0	5.8912864	145
CGTCTGA	62070	0.0	5.851032	145
ACAACGC	29340	0.0	5.731976	145
GCACACG	87405	0.0	5.5815563	145
TCGGAAG	105555	0.0	5.5763974	145
ATCGGAA	107680	0.0	5.5336704	145
AACGCTT	30340	0.0	5.4952664	145
CACACGT	86405	0.0	5.36091	145
CGGAAGA	104345	0.0	5.342336	145
TAGATCG	43920	0.0	5.265079	145