EGAF00005753715 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753715
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59760603
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

$Per base quality graph$

Per sequence quality scores

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	58715	0.0	6.6193433	145
AGATCGG	97145	0.0	6.50125	145
ACCGCGC	15380	0.0	6.326663	1
CGTCTGA	51845	0.0	6.2517242	145
ACGTCTG	58310	0.0	6.130601	145
CACGTCT	63120	0.0	5.9850793	145
TAGATCG	37110	0.0	5.9594755	145
ATCGGAA	90880	0.0	5.952092	145
TATGCCG	10355	0.0	5.9520693	145
GATCGGA	92275	0.0	5.8149614	145
CGGAAGA	89390	0.0	5.7430615	145
TCGGAAG	89485	0.0	5.6883464	145
TCGTATG	14750	0.0	5.456701	145
GCACACG	74930	0.0	5.428831	145
CACACGT	73700	0.0	5.2341156	145
CGCGATC	10385	0.0	5.1705756	3
ACCGTGC	18450	0.0	5.036012	1