EGAF00005753727 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753727
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61892582
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	57995	0.0	7.0747	145
ACCGCGC	16545	0.0	6.4220996	1
ACGTCTG	64965	0.0	6.393913	145
ACACGTC	65910	0.0	6.258167	145
GATCGGA	102655	0.0	5.970524	145
CACGTCT	70075	0.0	5.927656	145
AGATCGG	107750	0.0	5.856695	145
ATCGGAA	101250	0.0	5.666073	145
TCGTATG	15790	0.0	5.6568294	145
GCACACG	82725	0.0	5.5918145	145
CGGAAGA	99300	0.0	5.572574	145
TCGGAAG	99705	0.0	5.528088	145
TAGATCG	40835	0.0	5.495105	145
CGCGATC	10835	0.0	5.4871306	3
GCGCGAT	10890	0.0	5.326588	2
CACACGT	81760	0.0	5.267007	145
TATGCCG	11510	0.0	5.1104574	145
GCTCACG	51370	0.0	5.0954747	2
TCTCGTA	15275	0.0	5.0868936	145