EGAF00005753745 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005753745
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61914894
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	59920	0.0	6.218282	145
TATGCCG	14135	0.0	6.0723944	45-49
CGTCTGA	53120	0.0	5.922578	145
GCACACG	75170	0.0	5.882533	145
ATCGGAA	91255	0.0	5.878333	145
AGATCGG	94645	0.0	5.8669205	145
ACGTCTG	59330	0.0	5.4370685	145
CGGAAGA	89255	0.0	5.409047	145
TCGGAAG	89315	0.0	5.381065	145
TAGATCG	36145	0.0	5.3547864	145
GATCGGA	91525	0.0	5.316121	140-144
CACGTCT	63715	0.0	5.290423	145
CACACGT	75530	0.0	5.240253	145
CAGATCG	26320	0.0	5.0952435	145
CGTATGC	16745	0.0	5.0566373	45-49
GCCGTCT	17650	0.0	5.0027523	50-54